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Home
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Hotlist
Entrez
UCSC Genome Browswer
Eccles Library Electronic Journals
PUBMED
Ensembl Genome Browser
SGD
BLAST
EMBOSS
Bioperl
CPAN
Literature
Journals
Journal of Molecular Biology
Cell
Journal of Biological Chemistry
Genes and Developement
BioTechniques
Genome Research
Libraries
Eccles Library Electronic Journals
Sequence Analysis
Sequence Databases
NCBI - Genbank
Ensembl Genome Browser
UCSC Genome Browser
SWISS-PROT and TrEMBL
PIR (Protein Information Resource)
Motif Databases
Blocks WWW Server
ExPASy - PROSITE
Pfam: Pfam Home Page
COG (Clusters of Orthologous Groups)
MEME - Introduction
HMMER - (Hidden Markov Models of DNA and Protein Consensus)
Whole Genomes
Entrez Genome
TIGR (The Institute for Genomic Research)
GOLD: Genomes OnLine Database Homepage
Pairwise Comparison
NCBI-BLAST (Local alignment)
WU-BLAST (Local alignment)
ALIGN (Global alignment)
PipMaker and MultiPipMaker (Pairwise Genome Comparison)
The MUMmer Home Page (Pairwise Genome Comparison)
Multiple Sequence Alignment
ClustalW
TCoffee
JalView - Java alignment editor
Phylogenetics Analysis
Phylogeny Programs (A collection of phylogeny software)
PHYLIP Home Page
See the Biology Work Bench for a web based version
Gene Prediction / ORF Finding
GRAIL
GENSCAN
PROCRUSTES
NCBI ORF Finder
Bioinformatics
Perl
Perl.org
CPAN
Perl.com
Perl Monks
Perl Mongers
Scripts
SOFTWARE DEVELOPED
Workshop in Computational Bioskills - BioPerl
Bioperl
Bioperl.org
Rob's bioperl page
http://www.salmonella.org/bioperl/hackers_guide.html
Perldoc documentation for Bioperl Modules
Bioperl course
TOC for bioperl-run::Bio::Tools::Run::PiseApplication
Documentation
The Sanger Institute : GFF
SeqUtils documentation.
Clark Tibbetts's ABI Data format Paper
Nucleic Acid Thermodynamics
BioMath - Tm Calculations for Oligos
http://www.promega.com/biomath/oligotm.js
Tools
ProSight PTM
fasty
RNAStructure Home Page
Dynalign Home Page
MAFFT - a multiple sequence alignment program
MITOP - Description of MITOP
Entrez Utilities
Biological software
PatScan
Software review: alignment edition, visualization and presentation.
Alscript
BLAST Search
bioperl modules for Pise Web servers
Vienna RNA Secondary Structure Package
Ensembl BlastSearch (BlastView)
BiBiServ - Bielefeld University Bioinformatics Server -
http://ftp.genome.washington.edu/RM/webrepeatmaskerhelp.html
RepeatMasker Web Server
SEALS Home Page
DoTS
BioMOBY.org Main Page
www.biodas.org - Main page
SOURCE Search
Index of /Services/ftp/software/ebi/dos/clustalw
Alscript documentation top page
Michael Zuker's mfold
Electric Genetics - stackPACK v2.2
EMBOSS Homepage
MITOP - Description of MITOP
CMS Molecular Biology Resource
ABIM Online analysis tools
AcePerl
RNAStructure Home Page
MView
PISE Biological software
Vienna RNA Secondary Structure Package
PatScan
MELTING homepage
CHROMA sequence annotator
Eric Beitz: TeXshade
Molecular Biology
Databases
Enzyme Data Base
Vector Databse
E. coli Database Collection
REBASE Homepage - Restriction Enzyme Database
PALS db: Putative Alternative Splicing Database
Web Tools
EMBOSS
EMBOSS-W2H Session (From HGMP-RC)
EMBOSS Web Based GUI (From NRC Canada)
EMBOSS (From EMBnet.ch)
Biology Work Bench (San Diego Supercomputing Center)
EMBL (European Molecular Biology Laboratory) Computational Services
The Biocomputing Service Group
HUSAR
SRS
GDB
AceDB
ExPASy
Enzyme Nomenclature Database
EMBL-EBI Toolbox
EMBnet.ch (Swiss EMBnet node server) Tools
DNA Sequence Translation and ORF Searching
Primers, Peptides and Oligos
Integrated DNA Technologies - BioTools
Biopolymer Calculator
Calculate extinction coefficient of DNA
Extinction Coefficient Calculator
Peptide Properties Calculator
Oligo Calculator
Primer Calculator
Buffers
Buffer design
pK Values for Various Buffers
Citric Buffer Solution Wizard
Phosphate Buffer Solution Wizard
Software Packages
SEALS
IUBio Archive for Biology Data and Software (Indiana University)
EBI Biocatalog
Delila: Software package for Sequence Analysis
GCG: Sequence Analysis
DNASTAR, Inc.
Staden Package - Sequencing and sequence searching software
InforMax Inc. (Vector NTI Suite etc.)
Spidey: A Tool for mRNA to Genomic Alignments
RepeatMasker
sim4: A Computer Programe for Aligning a cDNA sequence with a Genomic DNA Sequence
Misc.
E. coli Genetic Stock Center
BIOSIS
American Type Culture Collection Home Page
Proteins & Proteomics
Databases
MIPS (Munich Information Center for Protein Sequences)
Tools
Mascot
ProFound: Protein identification by peptide mapping
ProteinProspector
ExPASy Proteomics Tools
PeptIdent
PeptideMass
TagIdent tool
Compute pI & MW
PROWL
RESID (Post-translational modifications)
LIGPLOT (Schematic diagrams of protein-ligand interactions)
ENZYME
BIND
IUBMB Nomenclature Home Page (EC numbers)
2-D Gel Electrophoresis
SWISS-2DPAGE
Robert H. Lurie Comprehensive Cancer Center - 2D Gel Core
Misc.
Proteome, Inc.
ProteoMetrics - Home Page
Protana - The Protein Analysis Company
Genomic Solutions Inc.
Biochemical Pathways
PathDB
KEGG
WIT
Genomics
GDB - The Genome Data Base
TIGR Database (TDB) - The Institute for Genomic Research
National Center for Genome Resources
Genethon
Microbial Genomes
Functional Genomics
Microarray
Gene Expression Links
SAGE
Macromolecular Structure
Structural Databases
PDB - The RCSB Protein Data Bank
Structural Modeling/Visualization Tools
MC-SYM RNA Molecular Modeling Software
Welcome to The Online Macromolecular Museum
Animated BioMolecules
Molecular Simulations Incorporated
RasMol Home Page
Cn3D
MolMol
MidasPlus
VMD
MolScript
Pymol
Other Aspects of Structural Modeling
CATH (Structure classification)
SCOP (Structure classification)
DSSP
STRIDE
TOPS
3Dee
CE
DALI
VAST
PROCHECK
WHAT IF
CSU
HBPLUS
naccess
Alpha Shapes
HBUILD
GRASP
GRASS
UHBD
DelPhi
Misc.
Nucleic Acid Structure Tutorials
Analytical Chemistry
Liquid Chromatography
Capital HPLC Web Page
Chromatography.Net
A Guide to HPLC
HPLC 2000
CTS - HPLC Parts, Repair, Reconditioning, Sales
Mass Spectrometry
Micromass
Base Peak - Mass Spectrometry Resource
Delta Mass
Mass Spectrometry Internet Resources FAQ
Mass Spectrometry Term Definitions ASMS
PeptideMass
EMBL Protein and Peptide Group - Mass spectrometry software
Spectroscopy On Line
Interpreting Electrospray Mass Spectra
Mass Spectrometry and Biotechnology Resource
Special Interset
Yeast
Saccharomyces Genome Database
Yeast Protein Map from Bordeaux
Yeast 2D-PAGE Top page
RNA
tRNA Database Dr. Mathias Sprinzl
MC-SYM RNA Modeling Software
The RNA Modification Database, University of Utah
tRNA Sequence Search Query
Ribosome
Venki's Structure and Function of the 30S Ribosomal Subunit
Peter Moore Lab
Tom Steitz Lab
RiboWeb Project
A computer generated model of 3D ribosomal structure
Mitochondria
Lab Groups
Brian T. Chait
Matthias Mann
Richard D. Smith
John R. Yates III
Michael Giddings
Organizations
National Science Foundation
National Institute of Health
National Library of Medicine
National Center for Biotechnology Information
National Academy of Sciences
y of Sciences
Swiss Institute of Bioinformatics
ExPasy
EMBL
European Bioinformatics Institute
The Sanger Center
American Association for the Advancement of Science
International Union of Pure and Applied Chemistry
Biochemical Nomenclature Committees
Cold Spring Harbor Laboratory
Analytical Laboratory Managers Association
Association of Biomolecular Resource Facilities
PITTCON 2000 Exposition
Laboratory Safety
University of Utah Environmental Health & Safety
American Confrence of Govermental Industrial Hygienists (ACGIH) Home Page
Agency for Toxic Substances and Disease Registry (ATSDR) Home Page
The Occupational Safety & Health Administration Home Page
American Industrial Hygiene Association Home Page
National Institute for Occupational Safety and Health (NIOSH) Home Page
United States Environmental Protection Agency's Homepage
National Toxicology Program (NTP) Home Page
IARC - International Agency for Research on Cancer
Rocky Mountain Center For Occupational and Environmental Health
HHMI Office of Laboratory Safety
Material Safety Data Sheets & Other HazMat Info
Vermont SIRI MSDS Collection (The best one)
Material Safety Data Sheets - U of U
Hazardous Chemical Database
New Jersey Hazardous Chemical Sheet
Scientific Reference
WebElements periodic table of the elements
Harcourt: AP Dictionary of Science and Technology
GardenWeb Glossary of Botanical Terms
Genomics Glossary
Glossary of Microbiology
Illustrated Glossary of Geologic Terms
Hypertext Glossary of Genetic Terms
Classification of Living Things
JSTOR - Electronic Journal Storage
Table of Physical Constants
American National Standards Institute
National Institute of Standards and Technology
The NIST Reference on Constants, Units, and Uncertainty
MBS - Molecular Biology Shortcuts
IUBMB (Inter. Union of Biochem and Mol Biol) Nomenclature Home Page (Enzyme EC numbers)
International Union of Pure and Applied Chemistry (IUPAC)
IUPAC (Inter. Union of Pure and Appl. Chem) Nomenclature Home Page
IUPAC Nucleic Acid Symbols
IUPAC Amino Acids and Peptides Nomenclature Home Page
Biotech Companies
Freezer Programs at the University of Utah
Alltech Chromatography
American Type Culture Collection Home Page
Amersham Life Science
BD
Beckman Instruments
BioSpec Products, Inc.
Chrom Tech
CTS - HPLC Parts, Repair, Reconditioning, Sales
Dynatech
DYNEX Technologies, Inc.
Epicentre Technologies
Fisher Scientific
Genetics Computer Group
Gilson
Higgins Analytical
Hudson Control Group, Inc.
Invitrogen
J. T. Baker
Labequip - New, used, and reconditioned lab equipment
LabVelocity
Life Technologies
MAC-MOD Analytical, Inc.
MICRA
Micromass
Midland Certified Reagent Company
Molecular Dynamics
New Brunswick Scientific Co., Inc.
New England Biolabs
Novagen
Olympus
Oxford Molecular
PerSeptive Biosystems
Perkin Elmer
Polymer Laboratories - Chromatography and Polymer Products
Promega
Qiagen
Roche Biochemical
Savant Instruments, Inc.
Schleicher & Schuell
Seton
Sigma Aldrich
Sorvall
SPSS Inc.
Tecan / Cavro
Thomson Instrument Co.
Western Analytical HPLC Supply
Whatman
Worthington Biochemical Corporation
YMC Europe
Zymark Corporation
Science News
ABCNEWS Science Index
inScight - Daily Science News from Academic Press and Science Magazine
ScienceDaily Magazine -- Your link to the latest research news
Yahoo! Science News from Reuters
CNN - Science - Technology
Zoology
American Society of Mammologists
Introduction to Vertebrates
Classification of Living Things
Botany/Horticulture
Seeds
Ampac Seed Company
Native American Seed Home Page
Rocky Mountain Rare Plants
Wildflowers from Earthly Goods Ltd
Wildseed Farms
Windham Wildflowers Home Page
World Wide Exotic Seeds
Floras
Atlas of the Vascular Plants of Utah
Plant Checklists - Western States
Flora of North America Internet Information Service
Nevada Mountain Atlas
Vascular Plant Image Gallery
General
American Indian Ethnobotany Database
Internet Directory for Botany
List of WWW Sites of Interest to Ecologists
Garden Gate: Roots of Botanical Names
Biological Resources Research Center - Nevada
Penstemon Website
USDA Plants Project Home page
Mathematics
Mathematical Visualization Toolkit
Astronomy
Hansen Planetarium
Astronomy Freeware and Shareware
New Science: The Winter Skies at Christmas (12/21/00)
J-Pass
J-Track Satellite Tracking
Astronomy Picture of the Day
This Planet Earth: NASAs Remote Senseing